Command Line Interface

bioontologies automatically installs the command bioontologies. See bioontologies --help for usage details.

bioontologies

CLI for bioontologies.

bioontologies [OPTIONS] COMMAND [ARGS]...

Options

--version

Show the version and exit.

index

Generate a node index file.

bioontologies index [OPTIONS] PREFIX

Options

--directory <directory>

--graph-id <graph_id>

--save-obograph

Arguments

PREFIX

Required argument