Index

Symbols

--directory bioontologies-index command line option --graph-id bioontologies-index command line option

--save-obograph bioontologies-index command line option --version bioontologies command line option

A

alternative_ids (Node attribute)

as_tuple() (Edge method)

B

bioontologies command line option --version bioontologies-index command line option --directory --graph-id --save-obograph PREFIX

bioontologies.obograph module bioontologies.robot module

C

convert() (in module bioontologies.robot) convert_to_obograph() (in module bioontologies.robot) convert_to_obograph_local() (in module bioontologies.robot)

convert_to_obograph_remote() (in module bioontologies.robot) created_by (Node attribute) creation_date (Node attribute) curie (Node attribute)

D

default_namespace (Graph attribute) Definition (class in bioontologies.obograph) definition (Node attribute)

definition_provenance (Node attribute) deprecated (Node attribute) description (Graph attribute)

E

Edge (class in bioontologies.obograph)

F

from_parsed() (Definition class method) (Edge class method) (Synonym class method) (Xref class method)

G

get_alternative_ids() (Graph method) get_curie_to_name() (Graph method) get_edges_df() (Graph method) get_incoming_xrefs() (Graph method) get_networkx() (Graph method) get_nodes_df() (Graph method) get_obograph_by_iri() (in module bioontologies.robot) get_obograph_by_path() (in module bioontologies.robot)

get_obograph_by_prefix() (in module bioontologies.robot) get_provenance() (Node method) get_sssom_df() (Graph method) get_xrefs() (Graph method) Graph (class in bioontologies.obograph) GraphDocument (class in bioontologies.obograph) guess() (GraphDocument method) (ParseResults method) guess_version() (ParseResults method)

I

identifier (Node attribute)

iri (ParseResults attribute) is_available() (in module bioontologies.robot)

L

license (Graph attribute)

M

Meta (class in bioontologies.obograph) model_config (Definition attribute) (Edge attribute) (Graph attribute) (GraphDocument attribute) (Meta attribute) (Node attribute) (Property attribute) (Synonym attribute) (Xref attribute)

module bioontologies.obograph bioontologies.robot

N

namespace (Node attribute)

Node (class in bioontologies.obograph) nodes_from() (Graph method)

P

parse_curie() (Node method) ParseResults (class in bioontologies.robot) PREFIX bioontologies-index command line option

prefix (Node attribute) properties (Node attribute) Property (class in bioontologies.obograph)

R

replaced_by (Node attribute)

roots (Graph attribute)

S

squeeze() (ParseResults method) standardize() (Definition method) (Edge method) (Graph method) (GraphDocument method) (Meta method) (Node method) (Property method) (Synonym method) (Xref method)

Synonym (class in bioontologies.obograph) synonyms (Node attribute)

T

title (Graph attribute)

V

version (Graph attribute)

version_iri (Graph attribute)

W

write() (ParseResults method)

X

Xref (class in bioontologies.obograph)

xrefs (Node attribute)