GraphDocument

class GraphDocument(*, graphs: List[Graph])

Bases: BaseModel

Represents a list of OBO graphs.

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

Attributes Summary

model_computed_fields	A dictionary of computed field names and their corresponding ComputedFieldInfo objects.
model_config	Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].
model_fields	Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

Methods Summary

guess(prefix)	Guess the primary graph.
standardize()	Standardize all graphs in the document.

Attributes Documentation

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'graphs': FieldInfo(annotation=List[bioontologies.obograph.Graph], required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

Methods Documentation

guess(prefix: str) → Graph

Guess the primary graph.

standardize() → Self

Standardize all graphs in the document.